That's what I'm doing.
Anyway... after applying the update, same problem (known.met being reported as corrupted and scanning starting over from scratch)
I've crosschecked by dropping the shares down to ~1800 files, waited until it finished scanning them and issued a shutdown command via amulcmd.
Amuled's been sitting there for about 45 mins so far eating 100% CPU. I'm pretty sure that if I HUP it, known.met will be reported as corrupt again.
Yes, it's Ubuntu (Natty) and I usually run amuled, not amule.
One other thing I spotted - while hashes are being generated, downloads and speed drops to virtually zero, even if there was pretty good throughput before the hashing started. Uploads don't seem to be affected as much.