monkeyboy,
if you have CVS-20050307 you can do 'man amulecmd', (after proper installation, of course) and in previous versions at least 'amulecmd --help'. They are friends of you, and can be a great help.
In case you don't really understand them, (or maybe just being too lazy), do the following:
amulecmd -h -p -P -wand then just remove all
-f command-line options from your scripts. It will work, I promise you.
.eMule is not what amulecmd/amuleweb wants, they now use a separate config file.
I apologise for being rude to you, and I agree that this was a sudden and rude change, but it has to be made once.
Have a nice aMule experience, and, just to know, we always try keep at a minimum the number of 'incompatible changes'.
If you encounter any problems with it, just look for me on #amule at irc.freenode.net