Oops, I just realized that you want to control a Linux aMule. Here is the problem: Whenever you use one of the "controlling apps" like amuleweb, amulecmd, and amule-gui, they need to match the version number of the "to-be-controlled apps" like aMule and amuled. If I now go ahead and post a current CVS build of amule-gui, you won't be able to use that for controlling your Linux aMule (which is most likely 2.0.3) because they are not the same version.
I don't really want to build the old 2.0.3 amule-gui because a lot has improved since then, but once 2.1.0 is out, I will post amule-gui and you will be able to use that to control the 2.0.1 Linux mule. How does that sound?